| abind | Combine multi-dimensional arrays |
| acepack | ace() and avas() for selecting regression transformations |
| adapt | adapt -- multidimensional numerical integration |
| ade4 | Analysis of Environmental Data : Exploratory and Euclidean
methods in Environmental sciences |
| agce | analysis of growth curve experiments |
| akima | Interpolation of irregularly spaced data |
| amap | Another Multidimensional Analysis Package |
| AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE
format. |
| anm | Analog model for downscaling |
| ape | Analyses of Phylogenetics and Evolution |
| ash | David Scott's ASH routines |
| aws | Adaptive Weights Smoothing |
| base | The R Base Package |
| Bhat | General likelihood exploration |
| bim | Bayesian Interval Mapping Diagnostics |
| bindata | Generation of Artificial Binary Data |
| Biobase | Biobase: Base functions for Bioconductor |
| blighty | United Kingdom coastlines |
| boolean | Boolean logit and probit |
| boot | Bootstrap R (S-Plus) Functions (Canty) |
| bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
| bqtl | Bayesian QTL mapping toolkit |
| brlr | Bias-reduced logistic regression |
| car | Companion to Applied Regression |
| cat | Analysis of categorical-variable datasets with missing values |
| cclust | Convex Clustering Methods and Clustering Indexes |
| cfa | Analysis of configuration frequencies (CFA) |
| CGIwithR | CGI Programming in R |
| chron | Chronological objects which can handle dates and times |
| CircStats | Circular Statistics |
| class | Functions for classification |
| classPP | Projection Pursuit for supervised classification |
| clim.pact | Climate analysis and downscaling package for monthly and daily
data. |
| clines | Calculates Contour Lines |
| cluster | Functions for clustering (by Rousseeuw et al.) |
| cmprsk | Subdistribution Analysis of Competing Risks |
| cobs | COBS -- Constrained B-splines |
| CoCoAn | Constrained Correspondence Analysis |
| coda | Output analysis and diagnostics for MCMC |
| combinat | combinatorics utilities |
| conf.design | Construction of factorial designs |
| cramer | Multivariate nonparametric Cramer-Test |
| ctest | Classical Tests |
| DAAG | Data Analysis And Graphics |
| date | Functions for handling dates |
| Davies | The Davies quantile function |
| DBI | R/S-Plus Database Interface |
| dblcens | Compute the NPMLE of distribution from doubly censored data |
| deal | Learning Bayesian Networks with Mixed Variables |
| deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tesselation. |
| Design | Design Package |
| Devore5 | Data sets from Devore's "Prob and Stat for Eng (5th ed)" |
| Devore6 | Data sets from Devore's "Prob and Stat for Eng (6th ed)" |
| diamonds | Analysis and sampling grids from diamond partitions |
| dichromat | Color schemes for dichromats |
| diptest | Hartigan's dip test statistic for unimodality |
| dispmod | Dispersion models. |
| dr | Methods for dimension reduction for regression |
| dse1 | Dynamic Systems Estimation (time series package) |
| dse2 | Dynamic Systems Estimation - extensions |
| e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |
| eda | Exploratory Data Analysis |
| effects | Effect Displays for Linear and Generalized Linear Models |
| eha | Event History Analysis. |
| ellipse | Functions for drawing ellipses and ellipse-like confidence
regions |
| emme2 | Read and Write to an EMME/2 databank |
| emplik | empirical likelihood ratio for censored/truncated data |
| EMV | Estimation of Missing Values for a Data Matrix |
| evd | Functions for extreme value distributions |
| exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |
| exactRankTests | Exact Distributions for Rank and Permutation Tests |
| fastICA | FastICA algorithms to perform ICA and Projection Pursuit |
| fdim | Functions for calculating fractal dimension. |
| fields | Tools for spatial data |
| flexmix | Flexible Mixture Modeling |
| foreign | Read data stored by Minitab, S, SAS, SPSS, Stata, ... |
| forward | Forward search |
| fpc | Fixed point clusters, clusterwise regression and discriminant
plots |
| fracdiff | Fractionally differenced ARIMA (p,d,q) models |
| ftnonpar | Features and Strings for Nonparametric Regression |
| g.data | Delayed-Data Packages |
| gafit | Genetic Algorithm for Curve Fitting |
| gbm | Generalized Boosted Regression Models |
| gee | Generalized Estimation Equation solver |
| geepack | Generalized Estimating Equation Package |
| genetics | Population Genetics |
| GenKern | Functions for generating and manipulating generalised kernel
density estimates |
| geoR | geoR - functions for geostatistical data analysis |
| geoRglm | geoRglm - a package for generalised linear spatial models |
| ggm | Graphical Gaussian Models |
| gld | Basic functions for the generalised (Tukey) lambda distribution |
| gllm | Generalised log-linear model |
| GLMMGibbs | Generalised Linear Mixed Models by Gibbs Sampling |
| glmmML | Generalized linear models with random intercept |
| gpclib | General Polygon Clipping Library for R |
| grasper | Generalized Regression Analysis and Spatial Predictions for R |
| GRASS | Interface between GRASS 5.0 geographical information system and
R |
| gregmisc | Greg's Miscellaneous Functions |
| grid | The Grid Graphics Package |
| gridBase | Integration of base and grid graphics |
| gss | General Smoothing Splines |
| gstat | multivariable geostatistical modelling, prediction and
simulation |
| haplo.score | Score Tests for Association of Traits with Haplotypes when
Linkage Phase is Ambiguous. |
| hexbin | Hexagonal Binning Routines |
| HI | Simulation from distributions supported by nested hyperplanes |
| hier.part | Hierarchical Partitioning |
| Hmisc | Harrell Miscellaneous |
| homals | Homogeneity Analysis in R |
| hwde | Models and tests for departure from Hardy-Weinberg equilibrium
and independence between loci. |
| HyperbolicDist | The hyperbolic distribution |
| ifs | Iterated Function Systems estimator |
| ineq | Measuring inequality, concentration and poverty |
| ipred | Improved Predictors |
| ismev | An Introduction to Statistical Modeling of Extreme Values |
| ISwR | Introductory Statistics with R |
| its | Irregular Time Series |
| KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |
| KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |
| knnTree | k-nn classification with variable selection inside leaves of a
tree |
| lars | Least Angle Regression, Lasso and Forward Stagewise |
| lasso2 | L1 constrained estimation aka `lasso' |
| lattice | Lattice Graphics |
| leaps | regression subset selection |
| lgtdl | A set of methods for longitudinal data objects. |
| linprog | Linear Programming / Optimization |
| lme4 | Linear mixed-effects models using S4 classes |
| lmeSplines | lmeSplines |
| lmtest | Testing Linear Regression Models |
| locfit | Local Regression, Likelihood and Density Estimation. |
| logistf | Firth's bias reduced logistic regression |
| logspline | Logspline density estimation |
| lokern | Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth |
| lpridge | Local Polynomial (Ridge) Regression |
| lpSolve | Interface to Lp_solve to solve linear/integer programs |
| lqs | Resistant Regression and Covariance Estimation |
| mapdata | Extra Map Databases |
| mapproj | Map Projections |
| maps | Draw Geographical Maps |
| maptools | Maptools |
| maptree | Mapping, pruning, and graphing tree models |
| MASS | Main Library of Venables and Ripley's MASS |
| Matrix | A Matrix package for R |
| maxstat | Maximally Selected Rank Statistics |
| mclust | Model-based cluster analysis |
| mclust1998 | Model-based cluster analysis |
| MCMCpack | Markov chain Monte Carlo (MCMC) Package |
| mda | Mixture and flexible discriminant analysis |
| meanscore | Meanscore method for missing covariate data in logistic regression models |
| merror | Accuracy and Precision of Measurements |
| methods | Formal Methods and Classes |
| mgcv | Multiple smoothing parameter estimation and GAMs by GCV |
| mix | Estimation/multiple Imputation for Mixed Categorical and
Continuous Data |
| mlbench | Machine Learning Benchmark Problems |
| mle | Maximum likelihood estimation |
| mmlcr | Mixed-Mode Latent Class Regression |
| moc | GENERAL NONLINEAR MIXTURES OF CURVES |
| modreg | Modern Regression: Smoothing and Local Methods |
| MPV | Data Sets from Montgomery, Peck and Vining's Book |
| msm | Multi-state Markov models in continuous time |
| muhaz | Hazard Function Estimation in Survival Analysis |
| multcomp | Multiple Tests and Simultaneous Confidence Intervals |
| multiv | Multivariate Data Analysis Routines |
| mva | Classical Multivariate Analysis |
| mvnmle | ML estimation for multivariate normal data with missing values. |
| mvnormtest | Normality test for multivariate variables |
| mvtnorm | Multivariate Normal and T Distribution |
| ncomplete | ncomplete |
| negenes | Estimating the number of essential genes in a genome |
| netCDF | read data in UCAR's netCDF format |
| NISTnls | Nonlinear least squares examples from NIST |
| nlme | Linear and nonlinear mixed effects models |
| nlmeODE | Non-linear mixed-effects modelling in nlme using differential
equations |
| nlrq | Nonlinear quantile regression |
| nls | Nonlinear Regression |
| nnet | Feed-forward neural networks and multinomial log-linear models |
| norm | Analysis of multivariate normal datasets with missing values |
| normalp | Package for normal of order p distributions (GED) |
| normix | Normal Mixture Models (1-d) {Classes and Methods} |
| nortest | Tests for Normality |
| noverlap | ncomplete |
| npmc | Nonparametric Multiple Comparisons |
| nprq | Nonparametric Quantile Regression |
| Oarray | Arrays with arbitrary offsets |
| odesolve | Solvers for Ordinary Differential Equations |
| orientlib | Support for orientation data |
| oz | Plot the Australian coastline and states |
| pamr | Pam: prediction analysis for microarrays |
| panel | Panel |
| pastecs | Package for Analysis of Space-Time Ecological Series |
| pcurve | Principal Curve analysis |
| pear | Package for Periodic Autoregression Analysis |
| permax | permax |
| PHYLOGR | Functions for phylogenetically based statistical analyses |
| pinktoe | convert S trees to HTML/perl for interactive tree traversal |
| pixmap | Bitmap Images (``Pixel Maps'') |
| pls.pcr | PLS and PCR functions |
| polspline | Polynomial spline routines |
| polynom | A collection of functions to implement a class for univariate
polynomial manipulations |
| pps | Functions for PPS sampling |
| prabclus | Test for clustering of presence-absence data |
| princurve | Fits a Principal Curve in Arbitrary Dimension |
| pspline | Penalized Smoothing Splines |
| psy | Various procedures used in psychometry |
| PTAk | Principal Tensor Analysis on k modes |
| ptproc | Multi-dimensional Point Process Models |
| qtl | Tools for analyzing QTL experiments |
| quadprog | Functions to solve Quadratic Programming Problems. |
| quantreg | Quantile Regression |
| qvcalc | Quasi variances for factor effects in statistical models |
| R.audio | [R] Class Library - Audio and sound classes |
| R.base | [R] Class Library - Deprecated package. Use R.basic instead! |
| R.basic | [R] Class Library - Stand-alone basic functions |
| R.graphics | [R] Class Library - Graphics and image classes |
| R.io | [R] Class Library - File, connection and I/O classes |
| R.lang | [R] Class Library - Basic classes |
| R.matlab | [R] Class Library - Matlab classes |
| R.oo | [R] Class Library - Object-oriented programming with references |
| R.tcltk | [R] Class Library - Class wrappers around the tcltk package |
| R.ui | [R] Class Library - User-interface classes |
| R2HTML | HTML exportation for R objects |
| RadioSonde | Tools for plotting skew-T diagrams and winds profiles |
| RandomFields | Simulation and Analysis of Random Fields |
| randomForest | Breiman's random forest for classification and regression |
| RArcInfo | Functions to import data from Arc/Info V7.x binary coverages |
| Rcmdr | R Commander |
| RColorBrewer | ColorBrewer palettes |
| relimp | Relative Contribution of Effects in a Regression Model |
| reposTools | Repository tools for R |
| rgenoud | R version of GENetic Optimization Using Derivatives |
| rgl | 3D visualization device system (OpenGL) |
| rmeta | Meta-analysis |
| RMySQL | R interface to the MySQL database |
| RODBC | ODBC database access |
| rpart | Recursive partitioning |
| rqmcmb2 | Markov Chain Marginal Bootstrap for Quantile Regression |
| RSQLite | SQLite interface for R |
| RSvgDevice | An R SVG graphics device. |
| Rwave | Time-Frequency analysis of 1-D signals |
| SASmixed | Data sets from "SAS System for Mixed Models" |
| sca | Simple Component Analysis |
| scatterplot3d | 3D Scatter Plot |
| SciViews | Various R functions used by SciViews GUIs (like Insider) |
| seacarb | Calculates parameters of the seawater carbonate system |
| seao | Simple evolutionary algorithm optimization |
| seao.gui | Simple evolutionary algorithm optimization: graphical user
interface |
| segmented | Segmented relationships in regression models |
| sem | Structural Equation Models |
| SenSrivastava | Datasets from Sen & Srivastava |
| serialize | Simple Serialization Interface |
| session | Functions for interacting with, saving and restoring R
sessions. |
| setRNG | Set (normal) random number generator and seed |
| sgeostat | An Object-oriented Framework for Geostatistical Modeling in S+ |
| shapefiles | Read and Write ESRI Shapefiles |
| shapes | Statistical shape analysis |
| Simple | functions and data to accompany simpleR |
| simpleboot | Simple Bootstrap Routines |
| sm | kernel smoothing methods: Bowman & Azzalini (1997) |
| sma | Statistical Microarray Analysis |
| smoothSurv | Survival Regression with Smoothed Error Distribution |
| sn | The skew-normal and skew-t distributions |
| sna | Tools for Social Network Analysis |
| snow | Simple Network of Workstations |
| som | Self-Organizing Map |
| sound | A Sound Interface for R |
| SparseM | Sparse Linear Algebra |
| spatial | functions for kriging and point pattern analysis |
| spatstat | Analysis of spatial point patterns |
| spdep | Spatial dependence: weighting schemes, statistics and models |
| splancs | Spatial and Space-Time Point Pattern Analysis |
| splines | Regression Spline Functions and Classes |
| StatDataML | implementation of the StatDataML proposal |
| statmod | Statistical Modelling |
| stepfun | Step Functions, including Empirical Distributions |
| strucchange | Testing for Structural Change |
| subselect | Selecting variable subsets. |
| SuppDists | Supplementary distributions |
| survey | analysis of complex survey samples |
| survival | Survival analysis, including penalised likelihood. |
| survrec | Survival analysis for recurrent event data |
| syskern | Coding Kernel for R/S Differences |
| systemfit | Simultaneous Equation Estimation Package |
| tapiR | Tools for accessing UK parliamentary information in R |
| tcltk | Tcl/Tk Interface |
| tensor | Tensor product of arrays |
| tframe | Time Frame coding kernel |
| tkrplot | TK Rplot |
| tools | Tools for Package Development |
| tree | Classification and regression trees |
| tripack | Triangulation of irregularly spaced data |
| ts | Time Series Functions |
| tseries | Time series analysis and computational finance |
| twostage | Optimal design of two-stage-studies using the Mean Score method |
| VaR | Value at Risk estimation |
| vardiag | A package for variogram diagnostics |
| vcd | Visualizing Categorical Data |
| vegan | Community Ecology Package |
| VLMC | VLMC -- Variable Length Markov Chains |
| waveslim | Basic wavelet routines for one-, two- and three-dimensional
signal processing |
| wavethresh | Software to perform wavelet statistics and transforms. |
| wle | Weighted Likelihood Estimation |
| xgobi | Interface to the XGobi and XGvis programs for graphical data analysis |
| XML | Tools for parsing and generating XML within R and S-Plus. |
| xtable | Export tables to LaTeX or HTML |
| yags | Yet Another GEE Solver |
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